Hi all,
I have encountered this ParseError using SequenceServer version 1.0.14
It happens when blasting single sequence against two nucleotide databases.
Blasting the same sequence against the databases individually (blasting just against one database) works without any error.
I appreciate any help concerning this.
Best regards,
Tereza
Ox::ParseError - invalid format, elements overlap at line 6953, column 26 [parse.c:599] : /var/lib/gems/2.7.0/gems/sequenceserver-1.0.14/lib/sequenceserver/blast/report.rb:36:in load_file' /var/lib/gems/2.7.0/gems/sequenceserver-1.0.14/lib/sequenceserver/blast/report.rb:36:in generate’ /var/lib/gems/2.7.0/gems/sequenceserver-1.0.14/lib/sequenceserver/blast/report.rb:21:in initialize' /var/lib/gems/2.7.0/gems/sequenceserver-1.0.14/lib/sequenceserver/blast.rb:96:in new’ /var/lib/gems/2.7.0/gems/sequenceserver-1.0.14/lib/sequenceserver/blast.rb:96:in run' /var/lib/gems/2.7.0/gems/sequenceserver-1.0.14/lib/sequenceserver/routes.rb:135:in block in class:Routes’ /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:1611:in call' /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:1611:in block in compile!’ /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:975:in block (3 levels) in route!' /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:994:in route_eval’ /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:975:in block (2 levels) in route!' /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:1015:in block in process_route’ /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:1013:in catch' /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:1013:in process_route’ /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:973:in block in route!' /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:972:in each’ /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:972:in route!' /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:1085:in block in dispatch!’ /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:1067:in block in invoke' /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:1067:in catch’ /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:1067:in invoke' /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:1082:in dispatch!’ /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:907:in block in call!' /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:1067:in block in invoke’ /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:1067:in catch' /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:1067:in invoke’ /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:907:in call!' /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:895:in call’ /var/lib/gems/2.7.0/gems/rack-1.6.13/lib/rack/head.rb:13:in call' /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:182:in call’ /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:2013:in call' /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:1487:in block in call’ /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:1787:in synchronize' /var/lib/gems/2.7.0/gems/sinatra-1.4.8/lib/sinatra/base.rb:1487:in call’ /var/lib/gems/2.7.0/gems/sequenceserver-1.0.14/lib/sequenceserver.rb:96:in call' /var/lib/gems/2.7.0/gems/rack-1.6.13/lib/rack/handler/webrick.rb:88:in service’ /usr/lib/ruby/2.7.0/webrick/httpserver.rb:140:in service' /usr/lib/ruby/2.7.0/webrick/httpserver.rb:96:in run’ /usr/lib/ruby/2.7.0/webrick/server.rb:307:in `block in start_thread’