Hello, I followed the tutorial to link sequenceserver’s BLAST results to JBrowse.
( Customization · JBrowse )
I used the example links.rb file but changed the url to the address of my genome browser.
When I use sequenceserve, there is a JBrowse link on the results page. However, when you click the link, it doesn’t take you to JBrowse, it takes you to a page with an error message pasted below.
I made sure that the database_dir was correct and the url inside links.rb was correct. Sequenceserver works correctly until I click the JBrowse link.
{“message”:“GET /%3Chttp://:8080/%3E”,“title”:“Sinatra::NotFound”,“more_info”:“/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:1090:in route_missing'\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:1037:in route!‘\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:1033:in route!'\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:1140:in block in dispatch!’\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:1112:in block in invoke'\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:1112:in catch’\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:1112:in invoke'\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:1135:in dispatch!‘\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:949:in block in call!'\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:1112:in block in invoke’\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:1112:in catch'\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:1112:in invoke’\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:949:in call!'\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:938:in call’\n/var/lib/gems/2.5.0/gems/rack-2.2.4/lib/rack/deflater.rb:44:in call'\n/var/lib/gems/2.5.0/gems/rack-2.2.4/lib/rack/head.rb:12:in call’\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:218:in call'\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:1993:in call’\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:1553:in block in call'\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:1769:in synchronize’\n/var/lib/gems/2.5.0/gems/sinatra-2.2.2/lib/sinatra/base.rb:1553:in call'\n/var/lib/gems/2.5.0/gems/sequenceserver-2.0.0/lib/sequenceserver.rb:110:in call’\n/var/lib/gems/2.5.0/gems/rack-2.2.4/lib/rack/handler/webrick.rb:95:in service'\n/usr/lib/ruby/2.5.0/webrick/httpserver.rb:140:in service’\n/usr/lib/ruby/2.5.0/webrick/httpserver.rb:96:in run'\n/usr/lib/ruby/2.5.0/webrick/server.rb:307:in block in start_thread’”}