This is pertaining to the PHI-Blast in Pathogen host interaction database.It is showing error while executing the sequence. Please look into the issue and Kindly provide necessary support.
Errno::ENOENT - No such file or directory - /tmp/sequenceserver_query20231117-1361316-2fzgqf.lock:
/usr/lib/ruby/1.9.1/tempfile.rb:346:in rmdir' /usr/lib/ruby/1.9.1/tempfile.rb:346:in rmdir’
/usr/lib/ruby/1.9.1/tempfile.rb:338:in ensure in locking' /usr/lib/ruby/1.9.1/tempfile.rb:338:in locking’
/usr/lib/ruby/1.9.1/tempfile.rb:144:in block in initialize' /usr/lib/ruby/1.9.1/tmpdir.rb:136:in create’
/usr/lib/ruby/1.9.1/tempfile.rb:134:in initialize' /var/lib/gems/1.9.1/gems/sequenceserver-1.0.5/lib/sequenceserver/blast.rb:38:in new’
/var/lib/gems/1.9.1/gems/sequenceserver-1.0.5/lib/sequenceserver/blast.rb:38:in run' /var/lib/gems/1.9.1/gems/sequenceserver-1.0.5/lib/sequenceserver/routes.rb:125:in block in class:Routes’
/var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1610:in call' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1610:in block in compile!’
/var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:974:in []' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:974:in block (3 levels) in route!’
/var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:993:in route_eval' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:974:in block (2 levels) in route!’
/var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1014:in block in process_route' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1012:in catch’
/var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1012:in process_route' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:972:in block in route!’
/var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:971:in each' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:971:in route!’
/var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1084:in block in dispatch!' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1066:in block in invoke’
/var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1066:in catch' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1066:in invoke’
/var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1081:in dispatch!' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:906:in block in call!’
/var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1066:in block in invoke' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1066:in catch’
/var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1066:in invoke' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:906:in call!’
/var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:894:in call' /var/lib/gems/1.9.1/gems/rack-1.6.4/lib/rack/head.rb:13:in call’
/var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:181:in call' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:2021:in call’
/var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1486:in block in call' /var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1795:in synchronize’
/var/lib/gems/1.9.1/gems/sinatra-1.4.6/lib/sinatra/base.rb:1486:in call' /var/lib/gems/1.9.1/gems/sequenceserver-1.0.5/lib/sequenceserver.rb:90:in call’
/var/lib/gems/1.9.1/gems/rack-1.6.4/lib/rack/handler/webrick.rb:88:in service' /usr/lib/ruby/1.9.1/webrick/httpserver.rb:138:in service’
/usr/lib/ruby/1.9.1/webrick/httpserver.rb:94:in run' /usr/lib/ruby/1.9.1/webrick/server.rb:191:in block in start_thread’
Hello shravani,
it sounds like there is an issue with their specific server. I recommend you contact the phi-base.org contact people directly.
(perhaps they are out of disk space)
Kind regards,
Yannick