Could i use only display BLAST on SequenceServer?

sequenceserver
#1

I have exist output BLAST from previous analysis, Could I use this as input to display on SequenceServer?

Regards,
Pavita

#2

Hello,

If the BLAST output you have are in XML format, you can visualise them using version 2.0 of SequenceServer (https://groups.google.com/g/sequenceserver/c/c98ePBzcuVE/m/lN-S35jVHgAJ). The feature is a bit limited at the moment, but can be useful.

You will need a working sequenceserver installation, i.e., with BLAST+ downloaded and database directory configured (all the things sequenceserver asks/automates for you during setup). The server should be running, for example, at http://localhost:4567 (the default).

To visualise BLAST’s XML output, run:

sequenceserver --import /path/to/xml/file

This will give you a job id, like:

0210b076-cddd-4d88-bc6c-057d7d5e07df

Copy the job id and access the results in browser at:

http://localhost:4567/0210b076-cddd-4d88-bc6c-057d7d5e07df

You will need to repeat the sequenceserver --import command for the different XML files

Priyam

#3

Dear, Priyam
I got it nicely! thank you so much.

Ragards,
Pavita